python - sqlite3 DatabaseError: database disk image is malformed multithread -
i trying query sqlite3 database multiple threads , getting error intermittently (some times when run , other times not) idea of how prevent happening
thanks
process process-72: traceback (most recent call last): traceback (most recent call last): file "/usr/lib64/python2.7/multiprocessing/process.py", line 258, in _bootstrap file "/usr/lib64/python2.7/multiprocessing/process.py", line 258, in _bootstrap self.run() self.run() file "/usr/lib64/python2.7/multiprocessing/process.py", line 114, in run self._target(*self._args, **self._kwargs) file "/scratch/retrosynth/retrosynth/rs/rs.py", line 341, in _retrieve_shortestpath file "/usr/lib64/python2.7/multiprocessing/process.py", line 114, in run self._target(*self._args, **self._kwargs) file "/scratch/retrosynth/retrosynth/rs/rs.py", line 341, in _retrieve_shortestpath optimal_pathways[0]) file "/scratch/retrosynth/retrosynth/rs/parser/generate_output.py", line 68, in output_shortest_paths optimal_pathways[0]) file "/scratch/retrosynth/retrosynth/rs/parser/generate_output.py", line 68, in output_shortest_paths self.db.get_organism_name(target_org))) file "/scratch/retrosynth/retrosynth/rs/database/query.py", line 60, in get_organism_name self.db.get_organism_name(target_org))) file "/scratch/retrosynth/retrosynth/rs/database/query.py", line 60, in get_organism_name q = self.cnx.execute(query, (organism_id,)) databaseerror: database disk image malformed
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